Introduction | How to use the functions of this package | Parallel processing (optional) | Load VCF and associated files of individuals and groups | Assessment of missing data | Basic stats for individuals in VCF | Filtering, subsetting, merging and otherwise wrangling VCF files | Subsetting samples and variants | Filtering | Extracting and binding | Extracting individuals - keeping all loci; binding | Extracting groups - keeping all loci; binding | Extracting groups - remove invariant loci; binding - intersection | Extracting groups - remove invariant loci; binding - union & missing genotypes | Extracting groups - remove invariant loci; binding - union & recover genotypes | Filtering with outgroup | Saving and copying VCFArrow objects | Converting a VCF file to other population genetic and phylogenetic formats

Installation | Introduction | Meta | How to use the functions of this package | Parallel processing (optional) | Load VCF and associated files of individuals and groups | Assessment of missing data | Basic stats for individuals in VCF | Filtering, subsetting, merging and otherwise wrangling VCF files | Subsetting samples and variants | Filtering | Extracting and binding | Filtering with outgroup | Saving and copying VCFArrow objects | Converting a VCF file to other population genetic and phylogenetic formats